microbiota affect central levels of brain-derived neurotropic factor and behavior in mice’,
Gastroenterology 141, 599–609.e3.
Berer, K., Mues, M., Koutrolos, M., et al. (2011) ‘Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination’, Nature 479, 538–541.
Bergman, E.N. (1990) ‘Energy contributions of volatile fatty acids from the gastrointestinal tract in various species’, Physiol. Rev. 70, 567–590.
Bevins, C.L., Salzman, N.H. (2011) ‘The potter’s wheel: the host’s role in sculpting its microbiota’, Cell. Mol. Life Sci. 68, 3675–3685.
Bezier, A., Annaheim, M., Herbiniere, J., et al. (2009) ‘Polydnaviruses of braconid wasps derive from an ancestral nudivirus’, Science 323, 926–930.
Bian, G., Joshi, D., Dong, Y., et al. (2013) ‘Wolbachia invades Anopheles stephensipopulations and induces refractoriness to Plasmodium infection’, Science 340, 748–751.
Bindels, L.B., Delzenne, N.M., Cani, P.D., Walter, J. (2015) ‘Towards a more comprehensive concept for prebiotics’, Nat. Rev. Gastroenterol. Hepatol. 12, 303–310.
Blakeslee, S. (15 October 1996) ‘Microbial life’s steadfast champion’, New York Times.
Blaser, M. (1 February 2005) ‘An endangered species in the stomach; Sci. Am.
Blaser, M. (2010) ‘Helicobacter pylori and esophageal disease: wake-up call?’, Gastroenterology 139, 1819–1822.
Blaser, M. (2014) Missing Microbes: How the Overuse of Antibiotics Is Fueling Our Modern Plagues (New York: Henry Holt & Co.).
Blaser, M., Falkow, S. (2009) ‘What are the consequences of the disappearing human microbiota?’ Nat. Rev. Microbiol. 7, 887–894.
Blazejak, A., Erseus, C., Amann, R., Dubilier, N. (2005) ‘Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru Margin’, Appl. Environ. Microbiol. 71, 1553–1561.
Bletz, M.C., Loudon, A.H., Becker, M.H., et al. (2013) ‘Mitigating amphibian chytridiomycosis with bioaugmentation: characteristics of effective probiotics and strategies for their selection and use’, Ecol. Lett. 16, 807–820.
Blumberg, R., Powrie, F. (2012) ‘Microbiota, disease, and back to health: a metastable journey’, Sci. Transl. Med. 4, 137rv7.
Bode, L. (2012) ‘Human milk oligosaccharides: every baby needs a sugar mama’, Glycobiology 22, 1147–1162.
Bode, L., Kuhn, L., Kim, H-Y., et al. (2012) ‘Human milk oligosaccharide concentration and risk of postnatal transmission of HIV through breastfeeding’, Am. J. Clin. Nutr. 96, 831–839.
Bohnhoff, M., Miller, C.P., Martin, W.R. (1964) ‘Resistance of the mouse’s intestinal tract to experimental Salmonella infection’, J. Exp. Med. 120, 817–828.
Boone, C.K., Keefover-Ring, K., Mapes, A.C., et al. (2013) ‘Bacteria associated with a tree-killing insect reduce concentrations of plant defense compounds’, J. Chem. Ecol. 39, 1003–1006.
Bordenstein, S.R., Theis, K.R. (2015) ‘Host biology in light of the microbiome: ten principles of holobionts and hologenomes’, PLoS Biol. 13, e1002226.
Bordenstein, S.R., O’Hara, F.P., Werren, J.H. (2001) ‘Wolbachia-induced incompatibility precedes other hybrid incompatibilities in Nasonia’, Nature 409, 707–710.
Bosch, T.C. (2012) ‘What Hydra has to say about the role and origin of symbiotic interactions’, Biol. Bull. 223, 78–84.
Boto, L. (2014) ‘Horizontal gene transfer in the acquisition of novel traits by metazoans’, Proc. R. Soc. B Biol. Sci. 281.
Bouskra, D., Brézillon, C., Bérard, M., et al. (2008) ‘Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis’, Nature 456, 507–510.
Bouslimani, A., Porto, C., Rath, C.M., et al. (2015) ‘Molecular cartography of the human skin surface in 3D’, Proc. Natl. Acad. Sci. 112, E2120–E2129.
Braniste, V., Al-Asmakh, M., Kowal, C., et al. (2014) ‘The gut microbiota influences blood-brain barrier permeability in mice’, Sci. Transl. Med. 6, 263ra158.
Bravo, J.A., Forsythe, P., Chew, M.V., et al. (2011) ‘Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve’, Proc. Natl. Acad. Sci. 108, 16050–16055.
Broderick, N.A., Raffa, K.F., Handelsman, J. (2006) ‘Midgut bacteria required for Bacillus thuringiensis insecticidal activity’, Proc. Natl. Acad. Sci. 103, 15196–15199.
Brown, C.T., Hug, L.A., Thomas, B.C., et al. (2015) ‘Unusual biology across a group comprising more than 15 % of domain bacteria’, Nature 523, 208–211.
Brown, E.M., Arrieta, M-C., Finlay, B.B. (2013) ‘A fresh look at the hygiene hypothesis: how intestinal microbial exposure drives immune effector responses in atopic disease’, Semin. Immunol. 25, 378–387.
Bruce-Keller, A.J., Salbaum, J.M., Luo, M., et al. (2015) ‘Obese-type gut microbiota induce neurobehavioral changes in the absence of obesity’, Biol. Psychiatry 77, 607–615.
Brucker, R.M., Bordenstein, S.R. (2013) ‘The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia’, Science 341, 667–669.
Brucker, R.M., Bordenstein, S.R. (2014) Response to Comment on ‘The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia’, Science 345, 1011–1011.
Bshary, R. (2002) ‘Biting cleaner fish use altruism to deceive image-scoring client reef fish’, Proc. Biol. Sci. 269, 2087–2093.
Buchner, P. (1965) Endosymbiosis of Animals with Plant Microorganisms (New York: Interscience Publishers / John Wiley).
Buffie, C.G., Bucci, V., Stein, R.R., et al. (2014) ‘Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile’, Nature 517, 205–208.
Bull, J.J., Turelli, M. (2013) ‘Wolbachia versus dengue: evolutionary forecasts’, Evol. Med. Public Health 2013, 197–201.
Bulloch, W. (1938) The History of Bacteriology (Oxford: Oxford University Press).
Cadwell, K., Patel, K.K., Maloney, N.S., et al. (2010) ‘Virus-plus-susceptibility gene interaction determines Crohn’s Disease gene Atg16L1 phenotypes in intestine’, Cell 141, 1135–1145.
Cafaro, M.J., Poulsen, M., Little, A.E.F., et al. (2011) ‘Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria’, Proc. R. Soc. B Biol. Sci. 278, 1814–1822.
Campbell, M.A., Leuven, J.T.V., Meister, R.C., et al. (2015), ‘Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia’, Proc. Natl. Acad. Sci. 112, 10192–10199.
Caporaso, J.G., Lauber, C.L., Costello, E.K., et al. (2011) ‘Moving pictures of the human microbiome’, Genome Biol. 12, R50.
Carmody, R.N., Turnbaugh, P.J. (2014) ‘Host – microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics’, J. Clin. Invest. 124, 4173–4181.
Caspi-Fluger, A., Inbar, M., Mozes-Daube, N., et al. (2012) ‘Horizontal transmission of the insect symbiont Rickettsia is plant-mediated’, Proc. R. Soc. B Biol. Sci. 279, 1791–1796.
Cavanaugh, C.M., Gardiner, S.L., Jones, M.L., et al. (1981) ‘Prokaryotic cells in the hydrothermal vent tube worm Riftia pachyptila Jones: possible chemoautotrophic symbionts’, Science 213, 340–342.
Ceja-Navarro, J.A., Vega, F.E., Karaoz, U., et al. (2015) ‘Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee’, Nat. Commun. 6, 7618.
Chandler, J.A., Turelli, M. (2014) Comment on ‘The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia’, Science 345, 1011–1011.
Chassaing, B., Koren, O., Goodrich, J.K., et al. (2015) ‘Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome’, Nature 519, 92–96.
Chau, R., Kalaitzis, J.A., Neilan, B.A. (2011) ‘On the origins and biosynthesis of tetrodotoxin’, Aquat. Toxicol. Amst. Neth. 104, 61–72.
Cheesman, S.E., Guillemin, K. (2007) ‘We know you are in there: conversing with the indigenous gut microbiota’, Res. Microbiol. 158, 2–9.
Chen, Y., Segers, S., Blaser, M.J. (2013) ‘Association between Helicobacter pylori and mortality in the NHANES III
