(2013) ‘Tsetse–
Wolbachia symbiosis: comes of age and has great potential for pest and disease control’,
J. Invertebr. Pathol. 112, S94–S103.
Douglas, A.E. (2006) ‘Phloem-sap feeding by animals: problems and solutions’, J. Exp. Bot. 57, 747–754.
Douglas, A.E. (2008) ‘Conflict, cheats and the persistence of symbioses’, New Phytol. 177, 849–858.
Dubilier, N., Mülders, C., Ferdelman, T., et al. (2001) ‘Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm’, Nature 411, 298–302.
Dubilier, N., Bergin, C., Lott, C. (2008) ‘Symbiotic diversity in marine animals: the art of harnessing chemosynthesis’, Nat. Rev. Microbiol. 6, 725–740.
Dubos, R.J. (1965) Man Adapting (New Haven and London: Yale University Press).
Dubos, R.J. (1987) Mirage of Health: Utopias, Progress, and Biological Change (New Brunswick, NJ: Rutgers University Press).
Dunlap, P.V., Nakamura, M. (2011) ‘Functional morphology of the luminescence system of Siphamia versicolor (Perciformes: Apogonidae), a bacterially luminous coral reef fish’, J. Morphol. 272, 897–909.
Dunning-Hotopp, J.C. (2011) ‘Horizontal gene transfer between bacteria and animals’, Trends Genet. 27, 157–163.
Eakin, E. (1 December 2014) ‘The excrement experiment’, New Yorker.
Eckburg, P.B. (2005) ‘Diversity of the human intestinal microbial flora’, Science 308, 1635–1638.
Eisen, J. (2014) ‘Overselling the microbiome award: Time Magazine & Martin Blaser for ‘antibiotics are extinguishing our microbiome’, The Tree of Life.
Elahi, S., Ertelt, J.M., Kinder, J.M., et al. (2013) ‘Immunosuppressive CD71+ erythroid cells compromise neonatal host defence against infection’, Nature 504, 158–162.
Ellis, M.L., Shaw, K.J., Jackson, S.B., et al. (2015) ‘Analysis of commercial kidney stone probiotic supplements’, Urology 85, 517–521.
Enomoto, S., Chari, A., Clayton, A.L., Dale C. (2017) ‘Quorum sensing attenuates virulence in Sodalis praecaptivus’, Cell Host Microbe 21, 629–636.
Eskew, E.A., Todd, B.D. (2013) ‘Parallels in amphibian and bat declines from pathogenic fungi’, Emerg. Infect. Dis. 19, 379–385.
Everard, A., Belzer, C., Geurts, L., et al. (2013) ‘Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity’, Proc. Natl. Acad. Sci, 110, 9066–9071.
Ezenwa, V.O., Williams, A.E. (2014) ‘Microbes and animal olfactory communication: where do we go from here?’, BioEssays 36, 847–854.
Faith, J.J., Guruge, J.L., Charbonneau, M., et al. (2013) ‘The long-term stability of the human gut microbiota’, Science 341.
Falkow, S. (2013) ‘Fecal Transplants in the ‘Good Old Days’, Small Things Considered.
Feldhaar, H. (2011) ‘Bacterial symbionts as mediators of ecologically important traits of insect hosts’, Ecol. Entomol. 36, 533–543.
Fierer, N., Hamady, M., Lauber, C.L., Knight, R. (2008) ‘The influence of sex, handedness, and washing on the diversity of hand surface bacteria’, Proc. Natl. Acad. Sci. 105, 17994–17999.
Finucane, M.M., Sharpton, T.J., Laurent, T.J., Pollard, K.S. (2014) ‘A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter’, PLoS ONE 9, e84689.
Fischbach, M.A., Sonnenburg, J.L. (2011) ‘Eating for two: how metabolism establishes interspecies interactions in the gut’, Cell Host Microbe 10, 336–347.
Folsome, C. (1985) Microbes, in The Biosphere Catalogue (Fort Worth, Texas: Synergistic Press).
Franzenburg, S., Walter, J., Kunzel, S., et al. (2013) ‘Distinct antimicrobial peptide expression determines host species-specific bacterial associations’, Proc. Natl. Acad. Sci. 110, E3730–E3738.
Fraune, S., Bosch, T.C. (2007) ‘Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra’, Proc. Natl. Acad. Sci. 104, 13146–13151.
Fraune, S., Bosch, T.C.G. (2010) ‘Why bacteria matter in animal development and evolution’, BioEssays 32, 571–580.
Fraune, S., Abe, Y., Bosch, T.C.G. (2009) ‘Disturbing epithelial homeostasis in the metazoan Hydra leads to drastic changes in associated microbiota’, Environ. Microbiol. 11, 2361–2369.
Fraune, S., Augustin, R., Anton-Erxleben, F., et al. (2010) ‘In an early branching metazoan, bacterial colonization of the embryo is controlled by maternal antimicrobial peptides’, Proc. Natl. Acad. Sci. 107, 18067–18072.
Freeland, W.J., Janzen, D.H. (1974) ‘Strategies in herbivory by mammals: the role of plant secondary compounds’, Am. Nat. 108, 269–289.
Frese, S.A., Benson, A.K., Tannock, G.W., et al. (2011) ‘The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri’, PLoS Genet. 7, e1001314.
Fujimura, K.E., Lynch, S.V. (2015) ‘Microbiota in allergy and asthma and the emerging relationship with the gut microbiome’, Cell Host Microbe 17, 592–602.
Fujimura, K.E., Demoor, T., Rauch, M., et al. (2014) ‘House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection’, Proc. Natl. Acad. Sci. 111, 805–810.
Funkhouser, L.J., Bordenstein, S.R. (2013) ‘Mom knows best: the universality of maternal microbial transmission’, PLoS Biol. 11, e1001631.
Furusawa, Y., Obata, Y., Fukuda, S., et al. (2013) ‘Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells’, Nature 504, 446–450.
Gajer, P., Brotman, R.M., Bai, G., et al. (2012) ‘Temporal dynamics of the human vaginal microbiota’, Sci. Transl. Med. 4, 132ra52.
Garcia, J.R., Gerardo, N.M. (2014) ‘The symbiont side of symbiosis: do microbes really benefit?’ Front. Microbiol. 5.
Gareau, M.G., Sherman, P.M., Walker, W.A. (2010) ‘Probiotics and the gut microbiota in intestinal health and disease’, Nat. Rev. Gastroenterol. Hepatol. 7, 503–514.
Garrett, W.S., Lord, G.M., Punit, S., et al. (2007) ‘Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system’, Cell 131, 33–45.
Garrett, W.S., Gallini, C.A., Yatsunenko, T., et al. (2010) ‘Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis’, Cell Host Microbe 8, 292–300.
Gehrer, L., Vorburger, C. (2012) ‘Parasitoids as vectors of facultative bacterial endosymbionts in aphids’, Biol. Lett. 8, 613–615.
Gerrard, J.W., Geddes, C.A., Reggin, P.L., et al. (1976) ‘Serum IgE levels in white and Metis communities in Saskatchewan’, Ann. Allergy 37, 91–100.
Gerritsen, J., Smidt, H., Rijkers, G.T., Vos, W.M. (2011) ‘Intestinal microbiota in human health and disease: the impact of probiotics’, Genes Nutr. 6, 209–240.
Gevers, D., Kugathasan, S., Denson, L.A., et al. (2014) ‘The treatment-naive microbiome in new-onset Crohn’s Disease’, Cell Host Microbe 15, 382–392.
Gibbons, S.M., Schwartz, T., Fouquier, J., et al. (2015) ‘Ecological succession and viability of human-associated microbiota on restroom surfaces’, Appl. Environ. Microbiol. 81, 765–773.
Gilbert, J.A., Neufeld, J.D. (2014) ‘Life in a world without microbes’, PLoS Biol. 12, e1002020.
Gilbert, J.A., Meyer, F., Antonopoulos, D., et al. (2010) ‘Meeting report: the terabase metagenomics workshop and the vision of an Earth Microbiome Project’, Stand. Genomic Sci. 3, 243–248.
Gilbert, S.F., Sapp, J., Tauber, A.I. (2012) ‘A symbiotic view of life: we have never been individuals’, Q. Rev. Biol. 87, 325–341.
Godoy-Vitorino, F., Goldfarb, K.C., Karaoz, U., et al. (2012) ‘Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows’, ISME J. 6, 531–541.
Goldenberg, J.Z., Ma, S.S., Saxton, J.D., et al. (2013) ‘Probiotics for the prevention of Clostridium difficile-associated diarrhea in adults and children’, in Cochrane Database of Systematic Reviews, The Cochrane Collaboration, ed. (Chichester, UK: John Wiley & Sons).
Gomez, A., Petrzelkova, K., Yeoman, C.J., et al. (2015) ‘Ecological and evolutionary adaptations shape the gut microbiome
